# Minutes of Meeting

# 19 May 2020

No Date Members
69 19 May 2020 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • 9 May, BKNG $1430.83, Bob bets $2860 by 8 May 2021
  • Digital health records -DHR
  • Zhao Geng
  • Idea: geospatial view using postcodes

Progress:

  • Next draft of survye
  • New search legend
  • Greyscale color legend
  • Bob resubmitted grant extension

Todo:

  • Keep your eye on PhD enrolment with financial support, make sure CC Bob and Matt
  • Bob review next draft of survey
  • Have a look at EuroVis presentations

Software:

  • Test out new search with multiple documents including edges
  • Test "epilepsy AND mg" on 200 documents with centroids and edges
  • Test "Migraine AND mg"
  • Test "(epilepsy OR migraine) AND mg"
  • Double-check "years" number category

# 12 May 2020

No Date Members
68 12 May 2020 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Example queries: epilepsy AND dosage
  • Depression AND dosage
  • And then sort by date
  • Epilepsy AND frequency
  • Epilepsy AND dosage AND frequency
  • Zhao Geng

Progress:

  • Next draft od survey
  • Dylan proofreads survey
  • Continues work on search functionality
  • Reorder-able color legend

Todo:

Survey:

  • Update CDSS definition, update section 6
  • Subdivide related work section
  • Subdivide 1.4 into 1.4.1 In scope + 1.4.2 Out-of-scope
  • Add labels to out-of-scope subsections
  • Add "image processing" to out-of-scope subsection
  • New table: open access datasets on y-axis, visual design on x-axis: bar/line chart, choropleth etc.

Software:

  • Two legends: 1) for number categories, 2) user-defined serach terms
  • Menu between user defined search (AND, OR, NOT logical operators)
  • Refer to colorbrewer for grey-scale color legend
  • Search queries search all letters

CGVC:

  • Publicly available stats for CGVC website? (currently not possible)

# 5 May 2020

No Date Members
67 5 May 2020 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • EHR with a focus on text
  • Klimov et al - out
  • Category for advanced query systems (Idea)
  • Vorograph - out (not EHR)
  • Metaphors of movement - out (not advanced Vis)
  • Kaggle data
  • Bob's landlord

Progress:

  • 10 synthetic letters from Arron
  • Screen capture demo for Arron
  • Search function with AND and OR logical operators
  • Dark mode
  • Bob records feedback session with Arron and achieves on YouTube
  • Updated CGVC website
  • Dylan finishes proof-reading

Todo:

Survey:

  • Ask Dylan about proof-reading
  • Add "Clinical decision support" to terminology section
  • Update the ToC to include EHR and PopHR
  • Add "PopHR" in front of paper summaries that focus on PopHR
  • Update Table 10 with color-mapping
  • Add "advanced query interfaces" to out-of-scope section for papers that have them but with basic visual design elements
  • Annotate Covid databases with "C" sub/superscript

Software:

  • Send screen capture to Bob
  • Clickable search elements
  • Combine search terms with number category
  • Connect global and thumbnail centroids of multiple search terms
  • "DOSAGE" in all caps means search for that number category
  • Drag and drop re-ordering of numbers in legend for importance ranking

# 28 Apr 2020

No Date Members
66 28 Apr 20 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • A tool to find patterns and trends
  • Swansea Bay health board
  • Dashbords
  • Visualizing disagreements eg: dosages
  • Pregnancy vs sodium valproate
  • Covid NLP challenge - what symptoms are associated with covid
  • Most prevalent drugs
  • Drugs associated with pregnancy
  • UCI repository
  • Affirmed diagnosis of epilepsy
  • Seizure frequency over time vs dosage
  • Drugs work best on epilepsy
  • Drugs over time for serizures
  • Users are clinicians
  • PhenoBloacks - keep in survey
  • Idea: assigning an importance to numbers
  • Idea: showing postcodes on map

Progress:

  • Meeting with Arron set up
  • Revisions to CGVC webpage
  • Clicking on centroid in global view brings up corresponding edges in thumbnail view
  • Search function
  • User option: undo
  • Input any text file
  • Dylan proofreading survey
  • 3 new tables: focus, context, out of scope for papers in previous surveys
  • 6 surveys reviewed for previous work
  • Revisit table 6 - "A" exclusion criteria
  • Relevancy -> off topic

Todo:

Survey:

  • Add kaggle to survey
  • Send Arron a copy of survey and ask for suggested improvements and Owen Pickrell
  • Check out "London Medical Databases" (no longer available) and "POSSUM" (not free, $300/year)
  • Total without duplications -> Total unique papers

Software:

  • Ask Arron for synthetic letters
  • Combinations of search terms
  • Try "AND" and "OR" combinations of search terms
  • User option: dark mode
  • Test out software on synthetic letters
  • Download and present some of the Covid data, look for EHR data - look for letters on kaggle

CGVC:

  • Ask Tom Kelly on CGVC 2021
  • Add CGVC 2021 to website

# 21 Apr 2020

No Date Members
65 21 Apr 20 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Alonso 2012 - focus
  • Driscoll 2011 - focus
  • Ramirez 2012 - focus
  • Kazywinski 2016 - no, not EHR
  • Malik 2014 - focus
  • Gotz 2011 - focus
  • Steenwijk 2010 - no, add to out-of-scope section with clarification
  • Naumova 2010 - no, not EHR
  • Kumasaka 2010 - no, not EHR
  • Perer 2012 - no software
  • Rajwan 2013 - no software
  • Rind 2010 - context

Progress:

  • Next draft of survey
  • Bob reviews papers
  • Updates to CGVC website

Todo:

Survey:

  • Show authors in Bibliography
  • Shorten names in table 3
  • 3.1 related work with a focus on visualization
  • 3.2 related work with a focus on EHR
  • For each related survey, states explicitly number of overlapping focus papers, context papers, out-of-scope papers

Software:

  • Divide time between paper and software
  • User options: search function
  • CC Bob in all communication with Arron
  • User options: click on centroid in global view - show corresponding edges in both views

CGVC:

  • New menu tab "For sponsors"
  • Email Franck and Martin about CGVC 2021
  • Show either "about" or "CfP" on CGVC 2020 homepage
  • Add "TBA" to program page

# 14 Apr 2020

No Date Members
64 14 Apr 20 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Stubbs 2012 sim - out of scope
  • Related work section of survey
  • Focus, focal, core

Progress:

  • Next draft of survey paper
  • Improved progress bar
  • 200 letters processed
  • Focus is rendered on top layer
  • CGVC 2020 webpage updated

Todo:

Survey:

  • More details are needed for previous surveys
  • Think about 2 tables for related work section, Vis vs Non-vis
  • Next draft of survey

Software:

  • User option: click on centroid in global view - show corresponding edges in both global and thumbnail view
  • Contact Arron and see if he would like a skype meeting soon

CGVC:

  • Update Swansea logo to Nottingham on sponsors page
  • Ask Rita and Alfie about accommodation and social events
  • Remove author guidelines

# 7 Apr 2020

No Date Members
63 7 Apr 20 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Skype meeting with Arron
  • Evision

Progress:

  • Bob reviews survey draft
  • Attempt to withdraw from SU
  • Global view rendering options: centroid, sample, edge
  • Thumbnail view rendering options: centroid, sample, edge
  • Bob submits extension request - 1 year

Todo:

  • Next draft of survey

Software:

  • Render focus centroid/sample/edge at the top layer to avoid occlusion
  • When user clicks on a global centroid, render global edges and local edges (either in focus or context mode)
  • Test on large numbers of letters eg. 200
  • Add number of letter in view (progress bar)
  • Look into bug with numbers in legend

# 31 Mar 2020

No Date Members
62 31 Mar 20 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • [LVP*12]
  • SoPopEHR SoapOpera
  • Survey title

Progress:

  • Summary of related EHR survey
  • Next draft of SoEHR survey including re-organization and table 3
  • 3 new datasets
  • User options Global: global centroid, individual samples, Thumbnail: thumbnail centroids, individual samples

Todo:

  • Bob read next survey summary
  • Bob review next draft of survey
  • Mention Johns Hopkins University dataset in survey - cite related paper

Software:

  • Look into letter 5 centroid hospital number
  • User options for global, thumbnail with a 3-state (focus, context and hide) switch

# 24 Mar 2020

No Date Members
61 24 Mar 20 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Zoom
  • European Data Portal
  • Sopan et al "community health map..." -- yes
  • Glicksberg et al "PatientExplorerR..." -- yes
  • "EHDViz..." -- out of scope
  • "Visualization collaborative ..." -- out of scope, because it uses off-the-shelf tools rather than developing a customized solution

Progress:

  • Started writing out-of-scope datasets section
  • Further searching for related EHR datasets
  • Next draft of survey
  • Update Terminology Table - columns A, F, G
  • User option: render thumbnail points as greyscale context points in global view

Todo:

  • Bob has a look at related health vis survey
  • Add summary of related health vis survey to our survey and describe the differences
  • Add German dataset to data "out of scope" section - should be international dataset, accessibility
  • Add closed access datasets to data "out of scope" section
  • Bob reviews SoEHR survey draft
  • Put datasets that require an access fee in their own category - these are not the focus datasets
  • Draft data classification sub-section: see table on reverse
  • Next survey paper summary
  • I encourage citing extra papers in out of scope section
  • Put key definitions in its own section 2 for now
  • Try adding terminology table to background section columns A, F, G

Software:

  • Add rendering option for GUI organized as focus and context options

# 17 Mar 2020

No Date Members
60 17 Mar 20 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Narrative Visualization: Telling Stories with Data - good example of 2 bibliographies
  • Atom habits - the hunchback of notre dame
  • The black swan

Progress:

  • Bob enrolls Wang in PhD program
  • Bob starts reviewing next draft of survey
  • Bob finds a new related survey
  • CGVC webpage updated
  • Spreadsheet of lost time collected = 42 days
  • 3 datasets from VAST challenge found
  • New table of paper on y-axis, x-axis: term used, dataset size/number of records, dataset level of detail, data source (Terminology Table)
  • First draft od data set cope and search methodology

Todo:

  • Set reminder on phone for Mohammed's meetings
  • Both: look at related health vis survey - Bob print it out
  • Add comparison of related survey to related work section
  • Try to get your PhD back on track - try to work full time on you PhD
  • Start writing "out of dataset scope" sub-section include VAST challenge 2011 mini 1, 2010 mini 3
  • Double check other VAST challenge open datasets
  • Add a column to the terminology table: VIS community
  • Include search engines you used in dataset search
  • Include websites with datasets - link data.gov, data.gov.uk
  • 3.3 scope to data cope
  • See TODO from 3 March

# 10 Mar 2020

No Date Members
59 10 Mar 20 11:00 Bob, Wang

Topic Discussed:

  • Redacted information

Progress:

  • Wang moves to Nottingham
  • Printing working!
  • Bob phones admissions and HR/Payroll

Todo:

  • Forward application email to Bob
  • Write a detailed list of interruptions due to move with dates and causes - in order to assess interruptions: View here
  • Bob to review survey

# 3 Mar 2020

No Date Members
58 3 Mar 20 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Wang's last day in Swansea
  • Chao Tong's work is actually on "population healthcare data" - same with Liam McNabb
  • Should we add another table of paper vs terminology
  • Packing and moving
  • Mattress flying off car

Progress:

  • Next draft of survey
  • Next draft of data sources spreadsheet
  • Updated thumbnails looking go od
  • Figure captions updated
  • Global centroids connected to individual points using edges
  • User clicks on global centroids to show edges

Todo:

Survey:

  • Clarify all acronyms in data sources
  • For the kinds of healthcare data sets provide a few examples 2-3 of the kind of data they provide - try to find the larger or popular ones
  • For the healthcare data sets - draft a search methodology sub-section and scope section (sub-), 3.2, 3.3, 3.4
  • Double-check which papers provide the sources of their data and include a table of them
  • New table of paper on y-axis and on x-axis: terminology used in paper, dataset size/number of records, dataset level of detail, data source
  • Start building bibtex references for open data sets
  • Check the annual IEEE VIS conference contest datasets, every year since 2004 - any EHR dataset? "VAST challenge"

Software:

  • User option: render thumbnail points as greyscale context points in global view
  • User option: thumbnail points are connected with edges in global view as context (greyscale) edges
  • Highlight corresponding centroids in both global and thumbnail views

# 25 Feb 2020

No Date Members
57 25 Feb 20 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Early retirement

Progress:

  • Bob reviews 2 paper summaries
  • Description added to dataset
  • More key definitions found
  • Secondary analysis book double-checked
  • Google trends and ngrams of EHR, EMR, PHR
  • Updates made to survey
  • Restarted software development
  • Color legend updated
  • Global centroids view updated

Todo:

  • Use 2 alarms!

Survey:

  • Upload draft of survey once a week
  • Make sure the why aspect of each dataset was collected, write to the website hosts if necessary
  • What research question is the I2B2 dataset trying to answer?
  • Try to make description "self-contained" - 2-3 sentence each
  • Datasets need more detail: FAIR, I2B2, Tycho, PCORnet, MIMIC, City health dashboard, healthdata.gov
  • What kind of data is in each dataset?
  • See if you can find any more information on the different levels of detail access to the SAIL databank
  • Include historical information in "key definitions" section
  • Classify datasets 1)individual, 2)aggregate, 3)then chronological
  • Write the first dataset description for survey paper

Software:

  • Take screenshots and screen capture demos to show software development progress
  • Highlight corresponding centroids in both global and thumbnail views
  • Render all global centroids as context after clicking on focus centroid
  • Connect global centroid with individual point using edges

# 18 Feb 2020

No Date Members
56 18 Feb 20 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Google NGram Viewer
  • CGVC 2020
  • Digital Humanities Conference 2020
  • Short papers [100], [84], [83], [75], [66]

Progress:

  • Next survey paper summary x2
  • Next draft of SoEHR
  • Next draft of datasets spreadsheet

Todo:

Survey:

  • Bob review survey draft and summaries
  • Look for a document, publication that describes the levels of anonymity for EHRs in SAIL database
  • New table: paper on y-axis, columns on x-axis: EHR Vis, PHR Vis, PopHR Vis
  • Attempt to put key definitions in chronological order by year of first appearance: EHR, EMR, PHR, PopHR and cite the first papers that introduce the terms
  • Include definition of BOS04 EHR if available
  • Check Secondary analysis book for definitions and historical term information
  • Include Google NGram and Google Trends for key definitions and historical term information (EHR,EMR,PHR,PopHR) in introduction, acronyms and full terms.
  • Start classifying data sets - individual vs aggregate web sites, then sort in chronological order by year of publication/founded/launched
  • A description of each data set should include: why it was started, who started it
  • Update out-of-scope section to exclude basic bar, pie, bubble and line graphs
  • Mention peer-review in in-scope
  • Write first data set description
  • Add number of derived publication to spreadsheet:0, 0-10, 10-50, 50-100, 100+
  • Plan on restarting software development

# 4 Feb 2020

No Date Members
55 4 Feb 20 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Frequence paper - maybe
  • City-Level Measures - data source
  • GBD
  • Healthcare Data Vis - yes
  • VisualDecisionLinc - no
  • Beyond simple charts - yes
  • AnamneVis - yes
  • Carroll Vis and analytics - related work
  • Data-driven healthcare - related work
  • A review of analytics - related work

Progress:

  • CGVC 2020 website is looking good
  • New papers for survey
  • Data sets fir survey paper searched
  • Registered for data
  • Key definitions added to introduction

Todo:

Survey:

  • Add to data section: city-level measures
  • Start organizing data sets into different categories: country of origin, size, number of dimensions, number of datasets, requires login or not, yea of publication, years-spanned, accessibility, derived publications: yes/no, level of detail, aggregate data provider: yes/no
  • Check IEEE Vis conference websites for open data sets
  • Have a look at Liam McNabb's thesis for definitions of Geo-Vis
  • Include definitions of EMR, PHR

CGVC:

  • Add Alfie as conference co-chair of CGVC 2020
  • Add CGVC 2021 announcement to CGVC news
  • Try setting up CGVC facebook page
  • Look into a FB feed for CGVC webpage

# 28 Jan 2020

No Date Members
54 28 Jan 20 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Moving
  • Richart Roberts color map
  • Metaphors of movement - out of scope
  • Only include data and institutions that provide open access EHR data

Progress:

  • House searching in Nottingham
  • Bob sends email about Wang's transfer and EPSRC grant transfer
  • Color legend changed to sqaures
  • Bob reviews survey
  • Next draft of survey
  • Context papers added
  • More images added to survey

Todo:

Software:

  • Make sure color legend is changed
  • See TODO list from 14 Jan 2020

Survey:

  • For each dataset includes: providing institution, URL, number of records/dimensions, time-span, short description and level of detail (group size)
  • Update survey with color coding used by a previous survey
  • Update survey with rest of context papers
  • Continue writing new sections 3, 3.1, 3.2 on survey of EHR data
  • Update visualization techniques table with groups for techniques

# 14 Jan 2020

No Date Members
53 14 Jan 20 11:00 Bob, Wang

Topic Discussed:

  • Computer
  • Handling "other" numbers
  • Colorgorical

Progress:

  • Alfie's role is conference co-chair
  • Next draft of survey
  • "other" numbers identified
  • Color legend next to number types
  • "measurement" instead of meta

Todo:

Software:

  • Change color legend to squares
  • Adopt Chao's color legends, check time-oriented cartograms figure 2 and figure 9
  • User option: show data samples (connect actual dots to centroid with edges)
  • Update position of "other" numbers

Survey:

  • Bring a printed copy survey on trip to Nottingham
  • Start including old EHR vis papers in survey from Rind et al.
  • Identify first EHR papers that combine Vis+ML and Vis+NLP
  • Check out national institute for health and care excellence (NICE)
  • Start writing new section 3, 3.1, 3.2 on survey of EHR data
  • Try to include public health wales in list of open data sources

# 6 Jan 2020

No Date Members
52 6 Jan 20 11:00 Bob, Wang

Topic Discussed:

  • Tables related to challenges are good
  • DVH*19 out of scope
  • ZCD19 -> ESS
  • CXR18 -> out of scope
  • Evaluation types: controlled user study (task-based), informal user study (likert scale), domain expert evaluation (open-ended), interview (systematic questions)

Progress:

  • Add Martin and Franck to GitHub repository
  • Add color legend and toggle switches for number types
  • Different types of numbers added
  • User option: user can choose type of number to focus on
  • User option: show data centroids both global and per letter
  • View document button fixed
  • Sort document by day, month, year and date
  • Overview shows global centroids
  • ToC in survey
  • First draft of survey abstract
  • Next draft of survey related work section
  • Great job on CGVC web page

Todo:

CGVC:

  • Ask Rita on Alfie's role
  • Unify "commitees" on one page

Software:

  • Move color legend to toggle switches for number types
  • Add "other" number type for the rest
  • Add number of numbers found
  • User "measurement" instead of "meta"
  • User option: show data samples (connect actual dots to the centroid)

Survey:

  • Add summary of "review of clinical databases" to survey - expand table of data sources
  • Download "secondary analysis of EHR" and read
  • Bob order a copy of the book
  • Write intro to 3.1 - 3.5 sub-sections
  • Upload all survey PDFs in online folder for easy access for Bob to view
  • Organize all survey PDFs into folders by technique
  • Revisit table 4 and update it with table 3
  • Add a table: papers vs evaluation type
  • Add a table: single vs cohort, single vs multiple data sources
  • Look for more papers
  • Next paper summary

# 16 Dec 2019

No Date Members
51 16 Dec 19 11:00 Bob, Wang

Topic Discussed:

  • Intro
  • Related work
  • Survey of EHR VIS <-- paper summaries
    • NLP
    • ML
    • ESS
    • Geo
  • Meta-data: resource oriented vs patient oriented

Progress:

  • Feedback on CGVC webpage
  • Next draft of CGVC README file
  • Progressive rendering - looks good! and progress bar
  • Next draft of survey paper
  • Next paper summary
  • Bob reviews survey intro

Todo:

CGVC:

  • Move dragon logo to sponsors
  • Update README file to include Bob, also authors
  • Include GitHub URL in README file
  • Ask Franck, Rita and Martin if they have GitHub accounts so they can be added as website administrators

Software:

  • Fix "View Document" button
  • Change sort by date to sort by year, month and dat of month
  • Include other data formats '.' and '/' separators
  • Overview show global centroids
  • See TODO list from 10 Dec 2019

Survey:

  • Add a table of content to survey
  • Put related work as section 2
  • Next draft of survey paper
    • New classification table
    • Idea: Add column "user study/interview"
    • Idea: Add column "Single patient vs cohort"
    • Possibly exclude chen2018sequence: Sequence Synopsis, dingen2018regression: RegressionExplorer
    • ACM HEALTH journal
  • Next paper summary

# 10 Dec 2019

No Date Members
50 10 Dec 19 11:00 Bob, Wang

Topic Discussed:

Progress:

  • First draft of CGVC README file
  • Local centroids in individual documents
  • Increase in rendering/sorting performance
  • User option: sorting of documents
  • Next draft of survey paper
  • Next paper summary

Todo:

CGVC:

  • Email Franck, Rita and Alfie the new CGVC website and ask for feedback (CC:Bob)
    • Correct the venue information (Rita)
    • Remove the dragon logo (Franck)
  • Add logistics of how to access CGVC website to the README file

Software:

  • Try adding a global interactive color legend similar to Chao's for focus and context rendering of different types of numbers
  • Add different types of numbers: time, date, DoB, NHS number, postcode, phone number, house number, quantities/measurements
  • User option: the user can choose which type of number to focus on
  • User option: the user can choose data samples or centroids or both
  • Experiment with progressive rendering

Survey:

  • Finish literature search methodology
  • Scan and email Bob's comments
  • Look at Liam's and Chao's PhD thesis for description of Geo-Spatial Vis
  • Next draft of survey introduction
  • Next paper summary [166] (Typo: "Dyland" Rees and Elif "Fırat")

Other:

  • VL on 19 Dec

# 3 Dec 2019

No Date Members
49 3 Dec 19 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • CGVC website

Progress:

  • Trip to Nottingham
  • Refactored software for performance
  • 10 seconds to process 200 documents
  • Looping and sorting letters by date, length and count of numbers
  • Vertical separator between Thumbnail views
  • Next paper summary

Todo:

  • Discuss CGVC website with Bob
  • See TODO list from 26 Nov 2019
  • Next paper summary [88]
  • Write a README file on how to update the CGVC website
  • Discuss the centroid calculation (local vs global) with Bob

CGVC:

  • Update submission to June
  • Add program committee from 2019 (tentative)
  • Remove "supporter" from program page

# 26 Nov 2019

No Date Members
48 26 Nov 19 11:00 Bob, Wang

Topic Discussed:

  • Bob's flu last Tuesday
  • Selection Bias ... -> Event Sequence Folder
  • Visual Analysis ... -> Event Sequence Folder
  • Idea: adding document similarity metrics for objectivity
  • Idea: Compare document similarity metrics with query-based similarity using visualization
  • Idea: Clustering in letter space
  • Boiler pilot light

Progress:

  • Camcorder memory card order
  • NLP survey summary - include in related work section
  • DeepEHR - include in related work section
  • Next draft of survey
  • Each number has it's own meta-data
  • Document ID to the top border
  • Sorting documents by length, data, count of numbers

Todo:

  • Ask Dylan for proof-reading
  • Summarize Chao's papers [87,88]
  • Add 2.2 to survey
  • Try using a "black canvas" for thumbnail overview as to add vertical separators between scatter plots
  • How many numbers total are there?
  • Try loading 200 letters and sorting by count of numbers
  • Add a color-legend for number type
  • User option: show centroid of number types
  • Look for a canvas that let's you draw edges and points
  • Think about setting up a meeting with Arron in Dec or Jan
  • Go through the latest changes made for CGVC website with Bob

# 15 Oct 2019

No Date Members
47 15 Oct 19 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Letting property
  • UK NHS IT system
  • SNOMED -> background
  • Acupuncture
  • Highlighting focus thumbnail
  • Medical information mart for intensive care

Progress:

  • Camcorder success
  • Next paper summary: NLPReViz
  • Next draft of survey
  • Sorting letters by length of documents
  • ASCII graphic border at top of thumbnails
  • Update to CGVC website - looks good

Todo:

  • Next paper summary
  • Add to survey: Contributions, challenges of EHR Vis
  • ASCII graphic render around left edge of thumbnails
  • Add Document ID to top border in Focus View
  • Sort documents in both Thumbnail and Focus view
  • Try adding process indication when adding 100 documents, eg. "Processing n of 200"
  • User option: sort documents by date (First appearance)
  • User option: sort documents by number of numbers
  • Try preprocessing letters for Thumbnail View (a database maybe)
  • Bob reserves accommodation in Nottingham
  • Discuss document similarity metrics with Bob
  • Order a new camcorder battery
  • Order a new backup drive
  • Order a new memory card

CGVC:

  • Move dragon to right
  • Add Rita Borgo to committee
  • Contact page: Rita and Alfie Abdul-Rahman as local chairs
  • Review Guidelines: refer to Eurovis 2014
  • Presenter Guidelines: refer to Eurovis 2014
  • Program: add some empty space
  • Keynote: add some empty space
  • Venue: update to King's College London
  • Travel: A link to KCL's travel page
  • Update links to latex templates
  • Add red line separator by default
  • Add MDPI to sponsors

# 7 Oct 2019

No Date Members
46 7 Oct 19 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Natural language processing of symptoms documented in free-text narratives of electronic health records: A systematic review
  • NLPReViz: An interactive tool for natural language processing on clinical text

Progress:

  • Camcorder ordered
  • First draft of survey intro
  • Table of papers vs technique
  • Attempt to sign up for UK Biobank
  • Matrix for Thumbnail View
  • Next version of CGVC website
  • New CGVC logo
  • List of past CGVC conferences added
  • Got CGVC 2018 from Richard
  • Sponsors updated
  • Committee updated

Todo:

  • Try citing the big UK NHS IT system in survey intro
  • Next paper summary: NLPReViz
  • Add "Natural language processing of symptoms documented in free-text narratives of electronic health records: A systematic review" to survey related work
  • Try ASCII graphics for border between Thumbnail Views
  • User clicks on a Thumbnail View to bring up the corresponding Focus View
  • Start building sort options: length of letter, chronological
  • Keep track of how many records you have to update manually (regex cases)
  • Replace filename by ID number -> -----nn----- which resembles a separator
  • Tong has 3 papers (87, 88, 96 on Bob's publication page)
  • Add Public Health England and Project Tycho to the list of public datasets
  • CGVC website
    • Match EG and EGUK logo sizes
    • Add the dragon logo
    • Add CGVC 2018 in original format
    • Make external links to be opened in a new tab
    • Add important dates up to month+year
    • Next version of menu with reorganization
    • Add CGVC 2018 proceedings

# 1 Oct 2019

No Date Members
45 1 Oct 19 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Bob away from 18-31 Oct at VIS
  • digital.nhs.uk
  • Idea: Thumbnail View wraps around to the beginning (infinite scrolling)
  • Vue: javascript library
  • eg.org - Eurographics webpage

Progress:

  • Research on camcorders
  • Abort symmetric scrolling
  • Context Thumbnail View, color is semi-transparent
  • Attempt to render 200 documents
  • User clicks on separator which brings letter into focus
  • Reduction in whitespace for Thumbnail View
  • Bob calls Franck
  • Next draft of survey: overview table - papers on y-axis: NLP, ML, ESS, Geospacial, other
  • Next paper summary

Todo:

  • Find microphone for Sony CX450
  • Order microphone + CX450 with budget code
  • Cite Chao's papers to survey (cartographic treemaps)
  • Start compiling a table of public EHR data sources for survey
  • Add in a test for visible thumbnails
  • Try wrapping the Thumbnail View around in a loop (infinite scrolling)
  • Try to add a view with a matrix of Thumbnail Views (with adjustable width)
  • CGVC 2020 webpage: replace unknown context with "TBA"
  • Add TPCG to CGVC webpage for history
  • Update links to past CGVCs
  • Ask Richard for the latest version of CGVC 2018 content
  • Change IEEE logo to Eurographics
  • Add names and titles to CGVC committees
  • Add an "important dates" as TBA
  • Search Pacific Vis for related papers
  • Cite Bob's eHealth on the Horizon in introduction
  • Checkout UK Biobank for interesting EHR datasets
  • Discuss innovative ways for sorting documents with Bob
  • Next paper summary
  • Discuss next paper summary with Bob:

# 24 Sep 2019

No Date Members
44 24 Sep 19 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Drugs, prisons
  • Swansea uni preferred supplies: insight.com, stonegroup.co.uk, xma.co.uk, academia.co.uk
  • Symmetric scrolling
  • Idea: compute an average letter (number of lines)
  • Idea: scatterplot matrix view
  • Sketch engine

Progress:

  • Next draft of survey
  • Next paper summary
  • Fit 1st page of detail view on screen without scrolling
  • 70-75 lines on average page
  • First version of CGVC web page

Todo:

  • Choose a camcorder + microphone for Bob
  • Create subsections a list of papers that
    • Use machine learning (ML)
    • Use natural language processing (NLP)
    • Use event sequence (ES)
    • Others
  • Create a new table - paper on y-axis, ML, NLP, ES and others on x-axis
  • Abort symmetric scrolling for now - remove Detail View scrolling
  • Change background color of non-focus Thumbnail View to grey
  • Try loading all 200 documents
  • See if you can reduce the white space in Thumbnail View
  • Explore ways to get smaller Thumbnail Views - 10 on screen
  • Read "Considerations for Visualization Comparison" by Michael Gleicher
  • Make CGVC 2020 webpage live
  • Ask Franck for link to CGVC 2019 web page
  • Move "about" content to homepage
  • Use CGVC 2018 terminology and context to set up initial 2020 web page (2020 at KCL, chaired by Rita Borgo)
  • Ask if Carlo's brother will make a logo
  • Ask Franck for history URLs to previous CGVC conferences
  • Next paper summary
  • Discuss next paper summary with Bob:
    • T. Gschwandtner. Visualization of patient data and treatment plans: A survey. Asgaard-TR-2009-1. Technical report, Vienna University of Technology, Institute of Software Technology and Interactive Systems, 2009
    • CareVis(2006) and CareCruiser

# 17 Sep 2019

No Date Members
43 17 Sep 19 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • CGVC artwork
  • 2 Oct 2019 to training 13:30

Progress:

  • Bob purchases cgvc.org.uk
  • Applied for TA training
  • Next version of scrolling
  • Draft description of overview table
  • Next paper summary

Todo:

  • Set up a CGVC web page on GitHub for all future CGVC conferences - model after VIS conference
  • Try adding an empty letter to handle boundary condition at the end of scrolling
  • Make scrolling symmetric
  • Use 10 letters as your default number of documents
  • Fit 1st page of detail view on screen without scrolling
  • Use original letters to derive an average number of lines per page
  • Print out description of overview table
  • Expand description of UMLS - who uses it? Where does it originate? How old is it? Why was it created?
  • Compare UMLS with SNOMED
  • Next paper summary

# 10 Sep 2019

No Date Members
42 10 Sep 19 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Henry
  • Joss Whittle
  • Salutation
  • File strip analogy
  • Camera

Progress:

  • Next draft of overview table
  • Show highlighted numbers in Detail View
  • 1st version of synchronize scrolling
  • Paper summary

Todo:

  • Apply for teaching assistant position
  • Save a confirmation that you applied as a TA
  • Write a description of overview table
  • Fit detail view on a screen without scrolling
  • Smooth synchronize scrolling, "real-time" scrolling
  • Or try align scrolling by using separators
  • Google scrolling and visualization for research literature
  • "Line Numbers" unnecessary in File strip view
  • Next paper summary

# 3 Sep 2019

No Date Members
41 3 Sep 19 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Gate YouTube videos
  • Evaluation: how much evaluation is enough?
  • Cars
  • Setting a default folder for letter sources
  • An even smaller Thumbnail View?
  • Visualization neo-natal spells - in scope
  • Temporal event sequence simplification - in scope
  • Data Vis tools ... - related work
  • Visual analytics on EHR ... - related work
  • GitHub for CGVC 2019 web page
  • Comparing cohorts of event sequences - meta-data folder
  • Finally enrolled

Progress:

  • 1st draft of overview table for survey based on UMLS
  • Gate working
  • Separator added to Thumbnail and Focus View
  • Add Detail View
  • Paper summary

Todo:

  • Use "cancer" as parent for "prostate cancer"
  • Show highlighted numbers in Detail View
  • Synchronize scrolling of Thumbnail view and Focus view
  • Next paper summary
  • Next draft of overview table

# 20 Aug 2019

No Date Members
40 20 Aug 19 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • SNOMED, UMLS
  • VLTK dispersion plot

Progress:

  • New microphone via ABW
  • Removed dropzone
  • Resize with aspect ratio
  • PhenoLines summary

Todo:

  • Try SNOMED or UMLS on the y-axis and number of patients on the x-axis
  • Fix bug when adding documents
  • Set a default folder for letter sources
  • Add a separator to Thumbnail view and Focus view
  • Add Detail view - checkbox in top-right corner of Thumbnail view and Focus view
  • Synchronize scrolling of Thumbnail view and Focus view
  • Start a new folder called "meta-patient-data"
  • Use google cite seer to find more papers
  • Next summary Download
  • RadStream - add to out of scope section
  • SepVis - meta-patient-data folder
  • PROACT - meta-patient-data folder
  • Tumor control models - out of scope
  • Echo - meta-patient-data folder

# 13 Aug 2019

No Date Members
39 13 Aug 19 11:00 Bob, Elif, Wang

Topic Discussed:

  • Rich's laptop - we have an extra now
  • Medical dictionary
  • UMLS
  • Vis USB sticks

Progress:

  • Correspondence with cosorders
  • First step at redesign - 3 level in parallel with 1 document
  • Training prodigy continued
  • Copied USB sticks
  • Next 3 paper summaries: PhysioEX, DecisionFlow, IDMVis

Todo:

  • Try ordering new equipment via ABW
  • User option: add N documents (all by default)
  • Remove dropzone section, add "Add files" as a menu option
  • User option: resize heatmap, thumbnail view (diagonally) and focus view (resize everything)
  • Try using SNOMED dictionary
  • Add a new overview table to survey - medical focus vs number of patients
  • Next summary - identified some papers Download them
  • Keep maintaining existing tables in the survey

# 16 July 2019

No Date Members
38 16 July 19 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Training event
  • Summer school
  • Wang holiday from 17 July to 11 August

Progress:

  • 2 day training event - medical school Swansea
  • Watched MoorVis video
  • Looked at "State-of-the-art report of visual analysis for event detection in text data streams"
  • Started an overview table of literature review paper
  • Received license for Prodigy
  • Installed Gate on mac
  • Paper summary - Doccurate

Todo:

  • Follow up with Julie about the order
  • Ask cosorders@swanswa.ac.uk for advice on ordering new equipment
  • User option to show original latter (with highlighted numbers) over to the right
  • Try updating visual design according to sketch on the back
  • Training prodigy
  • Test gate
  • Next 3 summaries
  • Search vispubdata for related papers
  • add "Medical focus" to all survey paper summary

# 9 July 2019

No Date Members
37 9 July 19 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Training event
  • Summer school
  • Wang holiday from 17 July to 11 August

Progress:

  • 2 day training event - medical school Swansea
  • Watched MoorVis video
  • Looked at "State-of-the-art report of visual analysis for event detection in text data streams"
  • Started an overview table of literature review paper
  • Received license for Prodigy
  • Installed Gate on mac
  • Paper summary - Doccurate

Todo:

  • Follow up with Julie about equipment order
  • Ask Mohammed for a link to MoorVis video
  • Get VL speaker names and talk title: Owen Pickrell, Arron Lacey
  • See todo list from 2 July 2019
  • Compare libraries for classifying numbers
  • Next paper summary - look out for what libraries researchers use
  • Try draft of "Scope Section"

# 2 July 2019

No Date Members
36 2 July 19 11:00 Bob, Mohammed, Wang

Topic Discussed:

  • Digest
  • Survey scope - focus, out of focus
  • TexShop
  • SciKit, SciKit-learn
  • Prodigy, Explosion AI
  • Backup use sticks
  • Impact factors

Progress:

  • Color-coded according to length
  • Testing NLTK, Gate, Spacy
  • Asked for license for Prodigy
  • Classification of phone numbers and nhs numbers with spacy
  • Next paper summary
  • Interview summary and archive - Arron Lacey

Todo:

  • Ask Mohammed for a copy of MoorVis
  • Follow up with Julie about equipment order
  • Have a look at "State-of-the-art report of visual analysis for event detection in text data streams"
  • User option: color mapping numbers based on category or length
  • Continue testing out NLTK, Gate and space
  • Add a color legend
  • User option: color map the overview plot
  • Add ability to expand letters to full length (remove the collapse exclusion)
  • On-mouse-over for numbers to show entire paragraph
  • Next paper summary
  • Placing USB sticks in an archive
  • Start building table that summarizes EHR papers

# 27 June 2019

No Date Members
35 27 June 19 11:00 Bob, Carlo, Wang

Topic Discussed:

  • Meetings are scheduled to Tuesdays
  • Observe meetings on Monday
  • NLTK
  • Gate
  • Spacy
  • GPE - geopolitical entity
  • SNOMED
  • UMLS (unified medical language system)
  • Prodigy

Progress:

  • Next EHR paper summary
  • Interview with Arron Lacey
  • Classified numbers with Spacy

Todo:

  • Check SoS paper for event sequence visualization
  • Next EHR paper summary
  • Summarize interview with Arron Lacey link
  • Archive interview audio with Arron Lacey link
  • Look for next interviewee
  • Try gate/nltk to identify numbers, compare with Spacy
  • Upload minutes of meetings with NWIS (append with Helen)
  • Capture phone numbers
  • Color coding numbers based on length

# 20 June 2019 with Helen Thomas (NWIS)

No Date Members
34 20 June 19 13:00 Helen Thomas, Gareth John, Wendy Dearing, Tim O’Sullivan, Jeffrey Herschel Giansiracusa, Bob, Wang

Topic Discussed:

  • End of July, deadline for EPSRC bid
  • Access to data
  • Co-supervision, secondments
  • ONS census data
  • ATOS
  • Radiology reports
  • Image analysis
  • Letters, 20 million
  • Patient reports of cancer outcomes
  • SNOMED - ontology to describe clinical terminology
  • Systemized nomenclature standard
  • Gate from Sheffield University
  • Visualize pathways through NHS
  • Call centre playlist
  • Healthcare playlist

# 20 June 2019

No Date Members
33 20 June 19 10:00 Bob, Wang

Topic Discussed:

  • EZY Vegan
  • NLTK
  • Microphone + tripod

Progress:

  • Vis papers uploaded to Mendeley
  • Next EHR paper summary
  • Summary of interview with Sam Turner
  • A4 aspect radio
  • Document white space preserved

Todo:

  • Bob add link to swanseavis.com
  • For next summary, collect data on the number of patients visualized. try to derive from examples if not disclosed explicitly
  • Start a summary table of EHR Vis papers
  • Next EHR paper summary
  • Modify/update interview questions
  • Shorten text lines
  • Color-code numbers based on type - start with the easiest first and most difficult last (look at NLTK)
  • Prioritize IEEE Vis and EuroVis papers over the VAHC for literature review
  • Order microphone and tripod for Bob

# 12 Jun 2019

No Date Members
32 12 June 19 11:00 Bob, Dylan, Elif, Wang

Topic Discussed:

  • Page layout visual designs
  • Helen Thomas - NWIS (next meeting on train)
  • Wang away for training courses on 4-5 July

Progress:

  • Derived 100 chars per line based on 10 word documents
  • Line breaks introduced for paragraphs
  • Grey line thickness is mapped to number of lines between numbered lines
  • Rainbow color heatmap for overview
  • Interview with Sam Turner (20 minutes)

Todo:

  • Choose a paper session for EuroVis 2019 conference report
  • Display whole line whenever a number appears (previously discussed as context-view)
  • Preserve A4 size aspect ratio
  • Preserve original white space when showing lines with numbers
  • Use MedGate to classify numbers
  • Ask Mohammed if he recommends any book on NLP
  • Have a look through introduction to text visualization book
  • Archive interview with Sam Turner link
  • Write interview summary with Sam Turner link
  • Arrange the next interview, on 25th July with Arron Lacey
  • Add short description of data source to each paper summary
  • Next paper summary
  • Find a tripod and directional microphone for Bob's camcorder
  • Bob send Sony camcorder model number to Wang
  • Present at conference tomorrow
  • Trip to Cardiff on 20 June 2019

# 30 May 2019

No Date Members
31 30 May 19 11:00 Bob, Dylan, Elif, Wang

Topic Discussed:

  • Bob away for EuroVis
  • LaTex formation guidelines

Progress:

  • Expand/collapse original text
  • Summary of Regression Explorer

Todo:

  • Prepare a poster for CoS DTC conference on 13 June 2019
  • Interview Sam Turner on 7 June 2019
  • Derive an average number of words/lines and use that as the limit for paragraphs
  • Try to base thumbnail view on original printed document format
  • Focus text position replaces position in printed file
  • Try reduce white space between lines by 50%
  • Grey line thickness reflecting number of lines between numbered lines
  • A rainbow color heatmap for overview
  • Start classifying numbers: postcodes, measurements, dates, times, NHS numbers, hospital numbers, patient weights/heights
  • Look for books on NLP
  • 2 paper summaries

# 23 May 2019

No Date Members
30 23 May 19 11:00 Bob, Dylan, Elif, Wang

Topic Discussed:

  • Ideas: Heatmap overview of all letters
  • Categorize numbers: Postcodes, measurements, dates, times, NHS numbers, hospital numbers, patient weights/heights

Progress:

  • Next draft of interview questions
  • Thumbnail view of number positions
  • Tooltips for individual numbers on thumbnail view
  • Next draft of survey summaries

Todo:

  • Record interview with Sam Turner (audio only)
  • Add "context" text to detail view on either side of number
  • Try to base thumbnail view on original document format
  • Focus text position reflects actual position on original line
  • User option: expand or collapse original text
  • Grey line thickness reflects number of lines between numbers in documents
  • "Permanent" proof-read by Carlo
  • Try summarize a VIS 2018 paper (Regression Explorer)

# 17 May 2019

No Date Members
29 17 May 19 11:00 Bob, Wang

Topic Discussed:

  • NY Times data: 1987-2007, 3.3 GB, $300
  • College of Science Doctoral Training Center
  • ngrest
  • Owen Pearson, Robert Powell, visible lunch on 4th July

Progress:

  • Next draft of survey summaries
  • Tested c++ backend servers
  • 200 patient letters
  • draft of interview questions

Todo:

  • Look at Doctoral Training Center webpage
  • Next draft of survey summaries
  • Ask Carlo to prof-read your writing before showing to Bob
  • Rename patient letters
  • Try thumbnail view of number positions Live Demo
  • Next draft of interview questions
  • Choose 1-2 vis 2018 paper to summarize

# 2 May 2019

No Date Members
28 2 May 19 14:30 Bob, Carlo, Wang

Topic Discussed:

  • Histogram
  • C++ and OpenGL are good for large dataset size and speed + cross-platform
  • Using dashboard methods to visualize multiple patient histories
  • Charticulator + D3
  • Bob away next week at Eurographics 2019

Progress:

  • Histogram of A&E admittance 2017 in 5 year intervals
  • Highlight number for MedGate - first draft
  • Summary of west15innovative - first draft
  • PhD application

Todo:

  • Copy 2017 VIS usb stick and look for relevant papers
  • Histogram of population by age in 1 year intervals
  • Screen capture dashboard overview of SAIL databank
  • Highlight lines with numbers: web-based frontend and c++ server end - use 200 letters as input (use QT libraries)
  • Next draft of west15 summary
  • Next draft of rind11 summary
    • You may need to add diagrams for classification
  • Lowri ext 2369 for PDR
  • Apply for PhD

# 25 Apr 2019

No Date Members
27 25 Apr 19 11:00 Bob, Dylan, Elif, Wang

Topic Discussed:

  • Tesla
  • 200 patient records/letters

Progress:

  • 1st survey paper summary
  • Started reading chapter 2 of QT book

Todo:

  • Print out survey paper summary for Bob to review
  • Add the followings to survey paper summary:
    • Classification
    • Future Challenges
    • Unsolved Problems
    • Papers Cited
    • Years Spanned
  • Follow Bob's file naming convention: surname of first author, year, first significant word of title (eg: laramee2011interactive)
  • Summarize West et.al 2014
  • Copy Vis 2018 USB and look for related papers on EHR vis
  • Look at the following papers:
    • bernard2019dashboard, Using dashboard networks to visualize multiple patient histories
    • kwon2019retain, RetainVis: Visual Analytics with Interpretable and Interactive Recurrent Neural Networks on Electronic Medical Records
    • mccurdy2019framework, A framework for externalizing implicit error using visualization
  • Histogram of population by age in 1 year intervals Live Demo
  • User option: highlight "numbers" for MedGate Live Demo
  • Draft a list of interview questions for EHR domain experts
    1. Please provide a brief description of your job.
    2. What general topic area(s) does your research(s) cover?
    3. What are your research objectives?
    4. Do you have any hypotheses? What are your unsolved problems?
    5. What general types of dataset are common in your research (e.g. numerical data, text documents, images, etc.)?
    6. On average, what is the size of dataset do you generally work with? (e.g. 5,000 rows of CSV, 3,000 images, etc.)
    7. What methods do you use to analyse the data (e.g. statistical, excel, document analysis tools, etc.)?
    8. What methods or tools do you use to get the “bigger picture” about your collections of results?
    9. What are the areas of improvement you'd like to see in the tools you use for your research(s) (e.g. data processing speed, interactive functions, user-friendliness etc.)?
    10. If you could find out anything in your research(s), what would that be?

# 18 Apr 2019

No Date Members
26 18 Apr 19 11:00 Bob, Carlo, Dylan, Elif, Wang

Topic Discussed:

  • Manage 8+ million documents
  • GATE extracts structured text from unstructured text
  • People: gender, age, weight
  • UKsERP
  • Trent Reed - Qt tutorial

Progress:

  • 5 interview papers found
  • Get Qt demo program running
  • Read CQT book chapter 1
  • VAHC mailing list
  • Read Chao's paper

Todo:

  • Take screenshots/demo video of MedGate
  • Summarize: Interactive Information Visualization to Explore and Query Electronic Health Records, liaise with Carlo on how to summarize a survey
  • Watch Bob's tutorial on how to read a vis paper, read Step 1 of PVSK
  • Upload PDFs of interview papers to CS server
  • Step 1 MedGate: generate a histogram of population by age
  • Read chapter 2 of CQT book
  • Draft a list of interview questions for EHR domain experts
  • Read section 1.3 literature search methodology of How to Write A Vis Survey Paper
  • Search for recent EHR surveys on vis

Todo Progress:

# 11 Apr 2019

No Date Members
25 12 Apr 19 11:00 Bob, Dylan, Elif, Wang

Topic Discussed:

  • Improve Healthcare with Interactive Visualization
  • HealTac 2019 24-25 April in Cardiff
  • Interview with Medical Experts
  • Mendeley

Progress:

  • Read Bob's Healthcare Vis Bio
  • Read SOS survey and medical visualization surveys
  • HEOR form signed and scanned

Todo:

  • Take a screen capture demo of MedGate
  • Check out the VAHC - Visual Analytics in Healthcare, sign up on mailing list
  • Read Chapter 1 of CQT book
  • Try QT demo program - including OpenGL examples
  • Read Chao's paper on Cartograms with Features
  • Search for survey papers on Healthcare Vis
  • Look for recent books on Healthcare Vis
  • Look at Dylan's survey of information visualization books
  • Think about first project direction
  • Think about literature survey
  • Start writing a list of interview questions
  • Look for Vis papers on interviewing domain experts
  • Read [KKC14] from SoS
  • Read [APS14] from SoS

Todo Progress:

  • MedGate screenshots: none as the server was not accessible due to hardware upgrade, but nothing exciting at the moment for DataVis
  • VAHC mailing list pending approval
  • Chao’s paper read
  • Qt and OpenGL set up, tried some demos, starting on Qt with OpenGL
  • Chapter 1 of CQT Book read
  • Survey papers on HealthVis:
    • Rind2011a: reviews existing EHR Vis systems, leads to 6 other survey papers
  • Books on HealthVis:
    • Healthcare Data Analytics
    • Most of the books mention on DataVis briefly, focus more on data analytics, mining, machine learning etc.
  • Interview questions are still WIP, found some examples from Robinson2009
  • Possible project direction:
    • A dashboard with widgets/sections for visualising different diseases/conditions for patients
    • Make use of SAIL’s data, and its close contacts with domain experts
  • KKC14 and APS 14 from SoS read
  • Interesting findings:

# 5 Apr 2019

No Date Members
24 5 Apr 19 11:00 Bob, Dylan, Elif, Wang

Topic Discussed:

  • Project partners:
    • We Predict
    • Digital Health Labs
    • Health Economics Outcomes Research (HEOR)
    • Connected Health Cities
  • Meeting schedule

Progress:

  • Bob sent a copy of bid

Todo:

  • Scan the signed copy of HEOR form
  • Upload minutes of meeting to CS Web
  • Continue the minutes from master's
  • Read the project bid

# 4 Apr 2019

No Date Members
23 4 Apr 19 11:00 Bob, Wang, Carlo

Topic Discussed:

  • First year target: first draft of a survey paper, and a draft of its project implementation
  • Survey of Healthcare
  • Project ideas: Healthcare text vis, glyph-based cartograms
  • Public Health England

Progress:

  • New desk, new PC, new visa!
  • New employment contract

Todo:

  • Keep bugging Julie Pollard about card access
  • Print out HEOR NDA
  • Apply PhD bursary
  • Look at Bob's project descriptions
  • Read Liam's SoS paper
  • Read Chao's paper on Cartograms with Features
Last Updated: 6/2/2020, 9:58:51 AM